FastQCFastQC Report
Wed 31 May 2023
EGAF00007931552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475117
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41800.8797832954830073No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11120.23404761353519238No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7560.15911870128831423No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6400.13470366246629778No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6260.1317570198498475No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6250.13154654537724392No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5950.12523231119913622No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5590.11765523018540697No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5260.11070957258948848No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4760.10018584895930896No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)