FastQCFastQC Report
Sun 21 May 2023
EGAF00007931555

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931555
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482726
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25520.5286642940301537No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22710.4704532177674291No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21180.4387582189482232No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20320.4209427294158591No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15170.31425694907670193No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13950.28898381276334817No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13720.2842192050977159No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC12250.2537671474086749No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12150.2516955788584No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC11950.24755244175785018No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG11890.24630950062768525No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG11070.2293226385154311No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11030.22849401109532116No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10770.22310793286460642No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG10000.2071568550274897No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9060.1876841106549057No Hit
TGGGCGGCCGCCACCACGACCGCGACCGCGGCCACGACCACGGC8170.1692471505574591No Hit
CGGGCGACCGCCACCACGACCACGACCACGACCGCGGCCACGGC7940.16448254289182682No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7500.15536764127061728No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7490.1551604844155898No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7160.14832430819968265No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7140.14790999448962766No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6840.14169528883880295No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6730.13941656343350056No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6700.13879509286841812No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6680.13838077915836314No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6260.12968019124720856No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6080.12595136785671374No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT5710.11828656422069661No Hit
CAGGGTAACGGTACCACGAGAGACGTGTTTCACCTGCAGTTTCT5640.1168364662355042No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5610.11621499567042173No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5440.1126933291349544No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5420.11227901542489943No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5280.10937881945451457No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)