FastQCFastQC Report
Wed 31 May 2023
EGAF00007931558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496779
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA15070.3033542078066907No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9020.18156967182590247No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8260.16627111854567123No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6330.12742084508403131No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6250.1258104710545333No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5860.11795989766073042No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG5490.11051191777430205No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)