FastQCFastQC Report
Sun 21 May 2023
EGAF00007931560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473578
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43070.9094594765804156No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13780.29097635447592585No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7000.1478109202707896No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6130.12944013446570576No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6070.12817318372052755No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5550.11719294392898319No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG4880.10304532727449331No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)