FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550932
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA27950.5073221377592879No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27300.4955239485090719No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14030.25465937720081605No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13860.25157369693537496No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13710.24885103787763282No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13650.24776197425453594No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC13230.24013852889285792No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12150.22053538367711442No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11810.2143640231462322No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11470.20819266261534997No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG11250.20419942933066149No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC10860.19712051578053189No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10810.19621296276128453No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10290.18677441136111173No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10200.18514081592646642No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10070.18278117807642322No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG9900.17969549781098212No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9550.17334262667625042No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8950.1624519904452818No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8460.15355797085665743No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8100.14702358911807628No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7630.13849259073715087No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA7470.13558842107555924No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC7370.13377331503706447No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7360.133591804433215No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG7250.13159518779087073No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6650.12070455155990213No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6440.11689282887906312No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC6090.11053995774433142No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5700.10346104419420182No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5560.10091989574030914No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)