FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480461
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA39970.8319093537248601No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20090.4181400779667861No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17060.3550756460982265No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17010.354034978905676No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11430.23789652021704155No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9290.19335596437588068No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7820.16276034891489632No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7170.14923167541173996No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6660.138616870047725No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5470.11384899086502337No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)