FastQCFastQC Report
Wed 31 May 2023
EGAF00007931574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523357
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42080.8040400720731737No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18910.3613212396127309No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12600.24075344363407772No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11850.22642288151300166No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11110.21228339355353992No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10140.19374919987694825No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9650.18438656595784522No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8360.1597379991095944No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7860.15018429102887704No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6290.12018564765542449No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6260.11961242517058146No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5570.10642830801919148No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5490.10489971472627671No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5470.104517566403048No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5410.10337112143336193No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)