FastQCFastQC Report
Wed 31 May 2023
EGAF00007931576

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931576
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475251
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45730.9622283803716353No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37130.7812713702864382No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG21380.4498675436769202No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG19010.39999915833948796No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG14550.30615401124879277No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14410.3032081994567081No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC9880.2078901464699706No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG8440.1775903680371004No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8320.17506538650102788No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6440.13550734243589177No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6420.1350865121798797No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6040.12709073731565004No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5910.12435534065157149No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5810.12225118937151105No Hit
CCGGCAGTTGCGCCGACCAGCGCGGCTAGCC5370.11299292373924516No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)