FastQCFastQC Report
Wed 31 May 2023
EGAF00007931578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491004
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45590.9285056740881947No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30510.6213798665591319No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13070.2661892774804278No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8900.18126125245415517No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6220.12667921238930846No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6190.12606821940350793No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5900.12016195387410288No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5810.11832897491670129No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5490.1118117164014957No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5360.10916408012969345No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5220.106312779529291No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4970.10122117131428664No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)