FastQCFastQC Report
Wed 31 May 2023
EGAF00007931583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500031
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG23010.46017146936889913No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG20200.4039749535528797No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15570.3113806943969474No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG14080.2815825418824033No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG13000.2599838809993781No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA10530.2105869436094962No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9260.18518851831186467No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8920.1783889398857271No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5870.11739272165125762No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5710.11419292003895759No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5110.10219366399283245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)