FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500031
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACGCACTGACGGAAGGTCTGTCCGATGAAC25940.5187678363941436No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG25230.5045687167395622No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG24930.49856908871649963No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC16830.3365791320938102No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15660.3131805828038662No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12300.24598474894556538No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9810.19618783635414605No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9770.19538788595107104No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6490.12979195289892026No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6340.126792138887389No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5690.11379294483742008No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG5690.11379294483742008No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5290.10579344080667No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)