FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931585

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931585
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492788
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT32530.6601215938699806No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC30930.6276532707776975No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21370.433655040301306No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA21320.4326404052046722No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA19310.3918520743199916No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17940.36405107267222414No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC16520.3352354359278229No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT16280.33036518746398047No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15650.317580785246394No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14990.3041876019708272No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG14390.29201198081122104No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13140.26664610339537487No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12660.25690560646769No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12590.25548511733240253No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12210.24777389059798532No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11160.22646655356867457No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT11040.22403142933675332No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10720.2175377647182967No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC10490.21287044327378105No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10100.204956289520037No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG10060.20414458144272993No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9660.19602750066965915No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9420.1911572522058167No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9370.19014261710918284No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC9110.18486651460668685No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC8970.18202553633611207No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8560.17370552854371454No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8290.16822649902189177No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7750.15726843997824624No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT7350.14915135920517544No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA7170.1454986728572936No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7010.1422518405480653No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6730.13656988400691575No Hit
GTAACCCTGCGCGATTTTAATCTGAGAGACACCGTATTTATCGG6550.1329171976590339No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6480.1314967085237465No Hit
AACCGCACCTGCGGACTCAGCCTGAACAGTACCTTCACCATCGT6440.13068500044643944No Hit
TACCGCACCTGCAGACTCGGCCTGAACGGTGCCTTCACCATCGT6220.12622060602125051No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6170.1252059709246167No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5810.11790059822885297No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5710.1158713280355853No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT5700.1156684010162585No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5610.11384205784231759No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5450.11059522553308929No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT5380.10917473639780188No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC5350.10856595533982158No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5300.10755132024318774No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT5220.10592790408857358No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5130.10410156091463267No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5060.10268107177934527No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5040.10227521774069173No Hit
CAGTGCCATGGCAATTTCGAACAGGAAGCGCGGGCGTTTGGTTA4980.10105765562473112No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)