FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931586

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931586
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492788
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC41210.8362622466456163No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG33710.6840669821505394No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26590.5395829443898796No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA23530.47748727647588823No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT21510.43649601857188075No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21040.42695844866352267No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19490.3955047606678734No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC19310.3918520743199916No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG19080.3871847528754759No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17850.3622247294982832No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17830.3618188754596297No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16050.32569786601946477No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC16020.3250890849614844No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15930.32326274178754355No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14720.29870857244900445No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG12880.2613700008928789No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12150.24655632848202472No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG12050.24452705828875704No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11660.23661290453501302No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC11200.22727826164598164No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11110.22545191847204074No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11040.22403142933675332No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10800.2191611808729109No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC10260.20820312182926534No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC10060.20414458144272993No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC10050.20394165442340317No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9770.19825969788225362No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9610.19501286557302533No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9440.19156310624447023No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8770.17796699594957668No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8330.16903820709919884No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7900.16031234526814778No Hit
GCCGCGCAGCAGCTGGTACTGAGCGCGGATA7780.15787722103622653No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA7370.14955721324382898No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC7360.14935428622450223No Hit
CTGGTGGACTACCAGGATAAGATGATCAAAG7190.14590452689594713No Hit
GCAGCGCAGCAGCTGGTGCTGAGCGCAGATA6840.1388020812195102No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6330.128452803233845No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6240.12662646005990405No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6210.12601767900192376No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6140.12459718986663636No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6120.12419133582798282No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6030.12236499265404191No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5960.1209445035187545No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5860.11891523332548683No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5780.11729181717087267No Hit
ATGCAGACCCTGTCCGAACGTCTGAAGAAAC5480.11120400659106959No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5340.10836302832049481No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC5290.10734839322386097No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5260.10673961216588067No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5210.10572497706924681No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5150.1045074149532862No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5140.10430448793395944No Hit
ACCCTGACCTCTATCGGTTCTAAAGCATCCA4960.10065180158607759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)