FastQCFastQC Report
Sun 21 May 2023
EGAF00007931587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931587
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496167
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT31410.6330529841766985No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC30690.6185417409864017No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22260.44863926863334325No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA21890.44118210199388513No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA19180.38656339498596237No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT17960.3619748995801817No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17560.35391309780779456No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC16720.3369833140857816No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15210.3065500123950202No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14990.30211602142020727No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG14630.2948603998250589No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14500.2922403142490331No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13180.2656363684001556No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12470.25132667025416844No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT12220.24628804414642652No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11160.22492426944960064No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11090.22351345413943288No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC11000.2216995487406458No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10790.21746710281014256No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG10380.20920375599344573No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10190.2053744001515619No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9840.19832032360072313No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC9560.19267706236005216No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9510.19166933713850376No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC9470.19086315696126505No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8770.1767550038595876No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8520.17171637775184567No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8420.1697009273087489No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7680.1547865940298327No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7660.15438350394121333No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7540.15196496340949722No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT7160.14430625172572945No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA7050.14208925623832297No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6860.1382599003964391No Hit
TACCGCACCTGCAGACTCGGCCTGAACGGTGCCTTCACCATCGT6760.13624444995334234No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6670.13443054455455522No Hit
AACCGCACCTGCGGACTCAGCCTGAACAGTACCTTCACCATCGT6540.1318104589785294No Hit
GTAACCCTGCGCGATTTTAATCTGAGAGACACCGTATTTATCGG6240.12576410764923907No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6010.12112857163011648No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5820.1172992157882326No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5720.11528376534513582No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT5580.11246213472480032No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5550.1118574995918713No Hit
CAGTGCCATGGCAATTTCGAACAGGAAGCGCGGGCGTTTGGTTA5490.1106482293260132No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5440.10964050410446483No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT5400.10883432392722611No Hit
GCCCTGACCGCGTGGGCCGGTGGACGGACCCTCACCCGGGTCGT5200.10480342304103256No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4970.10016788702190997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)