FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931588

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931588
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496167
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC41980.8460860960120282No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG32700.659052294892647No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26130.5266372007811886No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA24140.4865297369635627No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22010.4436006425256013No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG21730.4379573812849303No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT21500.43332184526580764No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC19650.39603601206851724No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18930.38152476887822045No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17930.3613702644472526No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17550.35371155276348487No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15780.31803807992067185No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC15690.3162241745218848No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15400.3103793682369041No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14970.30171293133158794No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG13330.26865954406480075No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG12230.24648958919073616No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12190.24568340901349747No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11700.23580770184232328No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC11460.23097062077889097No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11370.22915671538010388No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT10550.21263002174671028No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC10480.21121920643654254No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10330.20819603077189736No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10190.2053744001515619No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10140.20436667493001348No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10040.2023512244869167No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC10040.2023512244869167No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9430.19005697678402636No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG9180.1850183506762844No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9140.18421217049904567No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8230.165871571466865No Hit
GCCGCGCAGCAGCTGGTACTGAGCGCGGATA7700.15518968411845205No Hit
GCAGCGCAGCAGCTGGTGCTGAGCGCAGATA7400.14914333278916173No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA7340.14793406252330366No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC7020.14148462110539395No Hit
CTGGTGGACTACCAGGATAAGATGATCAAAG6720.13543826977610363No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6680.13463208959886488No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6640.13382590942162617No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6530.13160891393421975No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6460.130198098624052No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6250.12596565269354876No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6200.12495792747200035No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5950.11991930136425841No Hit
ATGCAGACCCTGTCCGAACGTCTGAAGAAAC5930.11951621127563904No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5770.1162914905666842No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5730.11548531038944548No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5510.11105131941463257No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC5360.1080281437499874No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5230.1054080581739616No Hit
ACCCCGTGCGAACTGACCGCGGCCAAAAACG5080.1023848825093164No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5070.10218333746500674No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)