FastQCFastQC Report
Wed 31 May 2023
EGAF00007931590

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931590
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516838
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48190.9324004813887523No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20330.3933534298948607No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19410.3755528811735979No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13490.2610102198367767No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13370.2586884091340033No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12370.2393399866108916No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11090.21457400578130864No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11070.2141870373308464No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10580.20470631029452172No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7920.1532395063830446No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7550.14608059004949325No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7220.13969561061686642No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5700.11028600838173665No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5440.10525541852572759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)