FastQCFastQC Report
Wed 31 May 2023
EGAF00007931594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474895
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44290.9326272123311469No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34920.7353204392549932No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17550.36955537539877237No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12730.2680592552037819No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12450.26216321502647955No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11640.24510681308499774No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10560.22236494382968866No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9960.20973057202118361No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9580.20172880320913045No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9180.19330588867012707No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9120.19204245148927657No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8280.17435433095736952No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7670.1615093862853894No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7600.16003537624106381No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7150.15055959738468502No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6860.1444529843439076No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6550.13792522557618No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6480.1364512155318544No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5860.12339569799639921No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG5770.12150054222512345No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5440.11455163773044569No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5300.11160361764179451No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4820.10149612019499046No Hit

[OK]Adapter Content

Adapter graph