FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479805
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT73631.5345817571721845No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16010.3336772230385261No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15720.32763310094725984No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15030.3132522587301091No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14610.3044987025979304No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13330.2778211981951001No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12820.26719188003459743No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12540.26135617594647825No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10590.22071466533279144No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10580.22050624732964436No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9870.2057085691061994No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9760.20341597107158116No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9260.19299507091422557No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8860.1846583507883411No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8780.18299100676316418No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8560.17840581069392775No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8390.17486270464042686No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7980.16631756651139523No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6980.14547576619668406No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6860.14297475015891875No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6410.13359594001729871No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6050.12609289190400266No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5760.12004876981273642No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5590.11650566375923553No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5330.11108679567741062No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5310.11066995967111638No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5290.11025312366482218No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4980.10379216556726169No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4950.10316691155782037No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4890.10191640353893769No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)