FastQCFastQC Report
Wed 31 May 2023
EGAF00007931598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482368
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT74301.5403177656892661No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16920.3507695369510415No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG16540.34289173411171553No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14920.30930741674406265No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14750.30578313652646943No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14100.29230794745920124No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12770.2647356375215603No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12500.25913825129361817No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10400.21560302507629028No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10320.21394454026801113No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10210.2116641236566273No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9840.2039936314183362No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9630.19964010879660343No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9440.19570120737694044No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9320.1932134801645217No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9210.19093306355313786No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8370.17351897306620673No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7820.1621168900092875No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7760.16087302640307816No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6450.13371533766750696No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6360.13184954225819293No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5770.11961821679713414No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5650.1171304895847154No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5590.11588662597850603No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5550.11505738357436646No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5140.10655764893193577No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5120.10614302772986599No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4930.102204126310203No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)