FastQCFastQC Report
Wed 31 May 2023
EGAF00007931607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467290
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG31070.6648976010614394No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25780.5516916689849987No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT25530.5463416721949966No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT25180.538851676688994No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC24840.5315756810545914No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22350.4782897130261722No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18400.39375976374414173No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA18050.3862697682381391No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17910.383273770035738No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT16110.3447537931477241No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14230.30452181728690964No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12710.27199383680369793No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11300.24181985490808705No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10750.23004986197008281No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG10360.2217038669776798No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10070.21549787070127757No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9570.2047978771212737No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9200.19687988187207087No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG8650.18510988893406666No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7560.16178390292965825No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7510.16071390357165785No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6950.14872991076205355No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG6880.147231911660853No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6710.1435939138436517No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6400.13695991782404932No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG6110.1307539215476471No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT6050.1294699223180466No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6020.1288279227032464No Hit
ACGGCGGGCAACACGACGACGACGACGTTTCATTTTTGCGTAGC5990.12818592308844615No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5940.12711592373044575No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5800.12411992552804468No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5740.12283592629844423No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5550.11876992873804276No Hit
AACGCTACGGATGTTCGCCACGCACAGGGTGTTGTTGGTAGACG5390.11534593079244153No Hit
GTAAGACAGCACCTGGCCCGGATAGATCAGGTTGGCGTTGGAGA5260.11256393246164052No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5120.10956793425923944No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT4850.10378993772603737No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4830.1033619379828372No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG4800.10271993836803697No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)