FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931614

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931614
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488816
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA17390.3557575856764099No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11290.2309662531504697No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9890.20232561945599162No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9180.18780072665379202No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9000.18411835946450197No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8230.16836601093253903No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6980.14279401656246932No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6290.12867827567019083No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6070.12417760466105857No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6060.12397302870609801No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5760.11783575005728127No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5320.10883440803901671No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5080.10392458511996334No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)