FastQCFastQC Report
Wed 31 May 2023
EGAF00007931616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469782
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14910.3173812534324431No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9830.20924599069355576No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8000.17029175234470456No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7140.15198538896764882No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6460.13751059001834892No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6220.1324018374480078No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6210.1321889727575769No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5180.11026390964319621No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5180.11026390964319621No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA4960.10558088645371683No Hit
ATGTACAACATCAAATGCCTGACCAAAAACG4810.10238791609725362No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)