FastQCFastQC Report
Wed 31 May 2023
EGAF00007931618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473068
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15200.32130687343045816No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10080.21307718974861967No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8000.16910888075287273No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6980.14754749845688145No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6610.1397262127220611No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6000.12683166056465456No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5650.11943314703171638No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA4970.10505889216772218No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4870.10294503115831127No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4860.10273364505737018No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)