FastQCFastQC Report
Sun 21 May 2023
EGAF00007931619

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931619
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510816
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22450.43949288980768025No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG18610.3643190503038276No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13130.2570397168452045No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12370.24216156111006704No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12190.23863778738332395No Hit
TTCGTAAGACGGCAGTGCGGACGGGGACTGACGATCGTCGGTGG11450.22415116206226898No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11220.21964856230031948No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10610.20770688467080123No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6860.1342949320303201No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6050.1184379502599762No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA5570.1090412203219946No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5560.10884545511495333No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5270.10316826411075612No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)