FastQCFastQC Report
Wed 31 May 2023
EGAF00007931620

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931620
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510816
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46030.9011072480110256No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26890.5264126417340099No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24510.4798205224581845No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22420.4389055941865564No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT18110.35453078995176346No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13180.25801854288041093No Hit
CTGCCGGTTACCGTCACCATCGCCCCGATGT11080.21690784940174151No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10510.20574923260038838No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9060.17736327757940237No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5880.11510994174027439No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5580.1092369855290359No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5430.10630050742341665No Hit
GCGCAGATCAAAGCAGGTGGCACCGCTGCGG5170.10121061204034329No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG5140.10062331641921944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)