FastQCFastQC Report
Sun 21 May 2023
EGAF00007931622

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931622
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486565
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21160.43488536988891513No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14520.2984185052356828No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13410.2756055203313021No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT12070.24806552053682446No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11430.23491208779916353No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11180.22977402813601475No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11110.22833537143033306No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT10280.21127701334867902No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9600.19730149106491424No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9240.18990268514997996No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9190.1888750732173502No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8920.18332596878114948No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8550.17572164047968925No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8000.16441790922076185No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7860.16154059580939853No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7540.15496387944056805No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7350.15105895409657497No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7230.14859268545826354No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7160.14715402875258188No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6910.14201596908943306No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6900.1418104467029071No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6790.13954970045112164No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6640.13646686465323235No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6360.1307122378305057No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6190.1272183572595645No Hit
GGTCAAGACGTTGACGGCGTGGTCAGCCTGC5870.12064164089073401No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5790.1189974617985264No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5640.11591462600063712No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5470.11242074542969593No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5380.11057104395096236No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5240.10769373053959902No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5070.10419984996865783No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4880.10029492462466473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)