FastQCFastQC Report
Sun 21 May 2023
EGAF00007931624

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931624
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465273
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38680.8313398800274248No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19560.42039834677705346No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13620.292731364166844No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT12200.2622116477852788No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11860.25490411006011526No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10470.2250291764190056No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10380.2230948281976388No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9860.21191859402974167No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9330.20052743228169267No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8960.1925751118160736No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8940.19214525665576984No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8680.18655713957182127No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8180.17581076056422787No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7740.1663539470375457No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7300.1568971335108635No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7170.15410307496888923No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7000.15044930610630747No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6790.14593582692311824No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6760.14529104418266264No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6670.14335669596129583No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6280.134974520335373No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6240.13411481001476552No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6010.12917147567127257No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5770.12401321374762775No Hit
GGTCAAGACGTTGACGGCGTGGTCAGCCTGC5680.12207886552626093No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5500.1182101690835273No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5480.11778031392322356No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5270.11326683474003434No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5140.11047277619806006No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5020.10789364523623765No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4910.1055294418545671No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4870.10466973153395963No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4770.10252045573244095No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)