FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931628

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931628
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454769
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38990.8573583511628982No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9820.21593380375531315No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7160.1574425697441998No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6650.14622808502778334No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6510.14314959902719843No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6280.13809208631195177No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5020.11038571230668756No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC4680.10290938916240992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)