FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931630

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931630
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497365
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38920.7825239009580489No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA38780.7797090667819407No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23600.4745006182582208No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20750.41719863681602043No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18210.36612950247805937No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16270.32712394318056154No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15480.3112402360439516No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC15440.31043599770792074No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14390.28932474138711006No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13650.27444633217053876No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13560.27263679591446927No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11330.22780050868074753No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG11280.2267952107607089No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10300.20709137152795232No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8460.17009640807053172No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7920.15923919053411478No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7530.15139786675781366No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7510.15099574758979825No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7150.14375760256552028No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6550.13169402752505704No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5940.11942939290058609No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5640.11339760538035445No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA5350.10756687744413057No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5300.10656157952409195No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5010.10073085158786807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)