FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931631

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931631
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481869
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20750.43061495966746144No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19480.40425924888299514No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19440.4034291477559254No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18180.3772809622532265No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17970.37292293133611004No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16770.34801989752401585No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14820.30755246757936283No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA13930.28908271750205966No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12680.26314205728112827No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12520.2598216527728491No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11420.2369938717784294No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10250.2127134138116376No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC9560.19839416936968346No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9220.1913383097895901No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8280.1718309333034497No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7570.15709663829796064No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7470.15502138548028616No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6880.1427773938560065No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6030.12513774490577315No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5810.12057218870688921No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5790.12015713814335433No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5600.11621415778977273No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTACCG5560.11538405666270293No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4870.10106481222074878No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT4830.10023471109367899No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)