FastQCFastQC Report
Wed 31 May 2023
EGAF00007931632

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931632
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481869
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42930.8909060346276685No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40820.8471182001747364No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA36410.7555995509152902No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22660.4702522884850447No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19660.40799470395480925No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17780.36897995098252845No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15620.324154490120759No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14440.2996665068721997No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC13410.27829140285015225No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13070.2712355432700589No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13010.2699903915794542No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11770.24425725664029022No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG10040.20835538289452113No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9490.1969414923973113No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA7790.1616621944968446No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7710.16000199224270498No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7620.1581342647067979No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7520.15605901188912338No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7250.1504558292814022No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6980.144852646673681No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5840.12119476455219158No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5830.12098723927042411No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC4970.10314006503842331No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4920.10210243862958604No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4920.10210243862958604No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)