FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931635

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931635
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468621
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT38150.8140907044285254No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC36590.7808015432513695No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT30250.6455109779544663No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA27160.5795728317766382No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA26170.5584470179526739No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA21880.4669018247154951No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT17780.3794110805960467No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT17280.36874147765465054No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA16050.34249425441881604No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC14170.3023765473591666No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT13320.28423822235879315No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT13310.2840248302999652No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC12910.2754891479468483No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT12100.25820439118178656No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10460.22320809353400722No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9710.20720368912191303No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9550.20378941618066623No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8790.18757161970974412No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7910.16879311853288692No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT7840.16729937412109144No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7770.165805629709296No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA7540.16089761235625377No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7160.1527887141207927No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC7140.15236193000313686No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6900.14724052059126672No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6020.12846201941440952No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5910.12611470676730235No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5840.1246209623555069No Hit
GTTCGGGCCACGGACGATGTAGTCTTCCGGGGCGTCATCGCCCA5810.12398078617902313No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC5380.11480492764942246No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5300.11309779117879906No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5250.11203083088465945No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4830.1030683644138867No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)