FastQCFastQC Report
Wed 31 May 2023
EGAF00007931642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491398
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA21290.43325369659624174No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13120.26699335365630306No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8830.17969141103545394No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7600.15466078413017553No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7130.14509623563791468No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)