FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454293
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC20860.4591750258093345No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20610.45367196941181137No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17520.3856541923384248No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16940.372887101496171No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12820.2821967320649889No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG11180.24609668209723679No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11010.24235460374692103No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10180.22408445650714406No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8880.19546856324002349No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8860.19502831872822166No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7690.16927401478781315No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7140.15716729071326216No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7100.15628680168965844No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6560.14440019987100836No Hit
GGACGCAGAACGACCGGTCACGACGCTAGAGCGGTGTTTAGCGC6560.14440019987100836No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT6360.1399977547529898No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6310.13889714347348517No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5970.13141298677285365No Hit
CGCAACACCTACGCTCTGCAGCAGTTGAGCATGTGCAGACTGGG5800.1276709084225379No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5690.12524956360762768No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5460.12018675172190635No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5300.11666479562749149No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5110.11248247276537389No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA4910.10808002764735535No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4850.10675929411194977No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4820.10609892734424699No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4680.10301721576163402No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG4650.10235684899393123No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)