FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931650

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931650
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454293
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39460.8686024217850594No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21700.47766529530501245No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21280.4684201605571735No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG20510.4514707468528021No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16890.3717864902166663No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14460.318296782032741No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12970.2854985659035028No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11330.2493985159357507No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11220.2469771711208405No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC10560.2324491022313793No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10420.22936739064876632No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9410.20713504280277265No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7970.17543743795303912No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7540.16597218094929925No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7390.16267034711078532No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7250.15958863552817235No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7220.15892826876046956No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6970.15342521236294637No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG6310.13889714347348517No Hit
CTGGGTGAGGCAGAATCCTTCACCATGGCCA6270.13801665444988148No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6110.13449469835546662No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6060.13339408707596198No Hit
GCGACCGGCCTGGAAGACCAGGCAGAACGTA5620.12370870781632118No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5430.11952638495420356No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5220.11490381758028409No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5210.11468369532438316No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5120.11270259502127482No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5030.11072149471816647No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA4780.10521843832064327No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4690.10323733801753494No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4650.10235684899393123No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)