FastQCFastQC Report
Wed 31 May 2023
EGAF00007931652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462835
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35060.7575053744855078No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22120.47792409822074816No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19240.41569889917573216No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13310.2875754858642929No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12430.26856223060053797No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC11200.2419868851750624No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA10200.22038091328443182No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9310.2011515983017706No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8230.1778171486598896No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7980.17241565568723194No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7920.1711192973737941No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7360.159019953115041No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6920.14951332548316354No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5990.1294197716248771No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5790.12509857724675102No Hit
GGCGCCGAAACCGAAGAAGGTGGTGACGATC5770.12466645780893838No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)