FastQCFastQC Report
Sun 21 May 2023
EGAF00007931653

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931653
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438314
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18330.41819334997285046No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18160.41431485190981804No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15140.3454144745547712No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG11530.263053427451553No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10180.23225358989217773No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9700.2213025365377332No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG9600.21902106708889063No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8160.18616790702555702No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7920.18069238034833476No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6790.15491177557641325No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6740.15377104085199195No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6070.13848519554474645No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5970.13620372609590384No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5630.12844672996983897No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4740.10814165187513974No Hit
CGCCAGCAGCGCCAGCTGGCGCGGGGAGACCGCGTCGCCAGCAT4520.10312241908768599No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)