FastQCFastQC Report
Wed 31 May 2023
EGAF00007931656

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931656
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470800
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40130.8523789294817332No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21740.46176720475785893No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19740.41928632115548004No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13050.27718776550552254No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12660.26890399320305863No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC11630.24702633814783348No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA10780.22897196261682246No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9400.19966015293118097No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8500.18054375531011044No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8500.18054375531011044No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7970.16928632115548004No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7780.16525063721325403No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6430.13657604078164826No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6280.13338997451146983No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5590.1187340696686491No Hit
GGCGCCGAAACCGAAGAAGGTGGTGACGATC5420.1151231945624469No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)