FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931659

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931659
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497763
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15300.30737519662972135No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC15010.30154913081124957No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT13550.2722179028975637No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12820.2575522889407208No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11780.23665881152275278No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10880.2185779176033574No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10640.21375634589151865No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10490.21074286357161942No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9520.19125567790293774No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8850.1777954568740545No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7960.15991546177598576No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7800.1567010806347599No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7490.15047321717363485No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7260.1458525442831227No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6880.1382183890727113No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5610.11270423876423116No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5530.11109704819361825No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5370.10788266705239241No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5010.10065030948463426No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)