FastQCFastQC Report
Wed 31 May 2023
EGAF00007931664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429608
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35210.8195843652818384No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17350.4038565389843765No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17260.40176160592912613No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13370.31121394387441575No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10200.23742574626170834No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9590.22322675555390029No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG9270.21577810469078787No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8540.19878586990931266No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7280.16945680713580752No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7150.1664307927226681No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6910.1608443045753338No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6710.15618889778588851No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6300.14664531386752575No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6190.14408484013333087No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5790.13477402655444035No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5670.13198078248077316No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5220.12150611720452133No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4870.11335915532299212No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4650.10823820785460234No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4610.10730712649671327No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4540.10567773412040744No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)