FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931665

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931665
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523558
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCACGGTGCGGGGTCGCCTCACAGGACGGGGTACGGCGGC9740.18603478506679297No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8010.15299164562474454No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7820.14936263031029992No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6530.12472352633328113No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5750.10982546346345581No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)