FastQCFastQC Report
Wed 31 May 2023
EGAF00007931666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523558
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGCTCTGGGCGCTCGTCGTAAGAAAAAAATG10190.19462982133784604No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9880.18870879635112062No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8070.15413765046088493No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7510.14344160532357444No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7210.13771158114287244No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6370.12166751343690671No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5780.11039846588152603No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)