FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508290
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24040.4729583505479156No Hit
CCGGCTCTGGGCGCTCGTCGTAAGAAAAAAATG9510.18709791654370536No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9500.1869011784611147No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8180.1609317515591493No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG6990.1375199197308623No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6930.13633949123531844No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5650.1111570166637156No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)