FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931669

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931669
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474081
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11660.2459495318310584No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9980.2105125495432215No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8570.18077079655164413No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7880.1662163216834254No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7290.15377119099900652No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6770.14280260124324745No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5370.11327178267005004No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT4850.10230319291429102No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)