FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474081
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT14320.3020580871201335No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10420.21979366395194072No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG9560.2016533039712623No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9350.19722368118528266No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8180.17254435423482484No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7510.1584117482033661No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7170.15123997797844674No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5740.12107635615010938No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5650.11917794638468954No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5460.11517019243546989No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5200.10968589755759037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)