FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461550
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11050.23941068139963165No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9410.2038782363774239No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8150.1765789188603618No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7930.17181237135738275No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7560.16379590510237244No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6530.14147979633842486No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5300.11483046257176903No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5030.10898060881811289No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT4870.10551402881594626No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)