FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931674

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931674
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461550
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21550.4669049940418156No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT13910.30137579893835986No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9670.20951142888094462No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG9550.20691149387931967No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9120.19759506012349692No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7670.166179178853862No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7520.1629292601018308No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7150.1549127938468205No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5850.12674683132921677No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5450.11808038132380023No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5260.11396381757122738No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)