FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931675

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931675
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481288
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13380.27800402253951895No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9220.19156928907431725No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7890.16393510746164458No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6850.14232642409534418No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6450.13401539203138246No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6400.13297651302338725No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG5320.11053672645069065No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5140.10679676202190788No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGT4880.10139459118033278No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)