FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481288
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22810.47393660344741606No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20330.42240820465085355No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13250.27530293711873144No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT12350.2566031149748176No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6640.13796313226176427No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6620.13754758065856618No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT5320.11053672645069065No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5020.10430345240271938No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)