FastQCFastQC Report
Sun 21 May 2023
EGAF00007931677

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931677
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552503
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG13550.24524753711744554No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT12970.2347498565618648No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT10260.18570034913837571No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10170.18407139870733735No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8990.16271404861150074No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8220.1487774727015057No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGAC7670.1388227756229378No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC7380.13357393534514744No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7300.13212597940644666No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGT6890.12470520522060513No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6880.12452421072826753No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG6530.1181894034964516No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTG6050.1095016678642469No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6020.10895868438723409No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)